The majority of the following files are needed for the Brownian dynamics simulation of supercoiled or linear DNA molecules. Some specific information can be found in the file "Input data".

backnocross.f
bd_hy0.f
bd_hydro.f
bd_nohydro.f
bd_stop.f
bwr.f
cal_dtwist.f
cal_gyrat.f
cal_twist.f
cal_writhe.f
dot.f
dwr.f
dwr_ab.f
force4.f
force_circular.f
force_electro_circular.f
force_electro_init.f
force_electro_linear.f
force_linear.f
force_tor.f
I.f
init_circular.f
Init_conf
init_diffu.f
Init_dtw
Init_fort
init_juxta.f
Init_juxtadistance
Init_juxtapair
init_linear.f
init_phi0.f
init_rand.f
Input_data
Input_juxta
juxta.f
kpoly.f
kwr.f
main.f
Makefile
out_conf.f
out_conf_e.f
out_dissociation_time.f
out_energy.f
out_f117.f
out_final.f
out_juxtaed.f
out_juxtapair.f
out_juxta_distance.f
out_juxta_distribution.f
out_tip.f
random_number.f
relativeorientation.f
setup_conf.f
torsion_bd.f
update_bond.f
update_euler.f
update_rij.f
update_vector.f